We have access to dataset JGAS000114 from the Biobank Japan Project. This includes:

  • genotype data for 182,505 individuals (csv.gz)
  • WGS (hg19) for 1,026 individuals (fastq, bam, vcf)
  • reference panel (hg19) from BBJ and 1KGP WGS data (vcf.gz)
  • phenotype data for 58 quantitative traits from 162,255 individuals (txt.gz)

See list of phenotypes and more details here


Text and figures are licensed under Creative Commons Attribution CC BY 4.0. The source code is licensed under MIT.

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If you find any mistakes (including typos) or want to suggest changes, please feel free to edit the source file of this page on Github and create a pull request.


For attribution, please cite this work as

Sabrina Mi (2021). Japan Biobank Data Summary. ImLab Notes. /post/2021/08/12/japan-biobank-data-summary/

BibTeX citation

  title = "Japan Biobank Data Summary",
  author = "Sabrina Mi",
  year = "2021",
  journal = "ImLab Notes",
  note = "/post/2021/08/12/japan-biobank-data-summary/"